Standalone Hantavirus visualization engine, powered by MicrobeTrace

HantaNet

The Visualization Multitool for Molecular Epidemiology and Bioinformatics - with focus on hantaviruses
(Hantanet is a standalone Hantavirus data visualization engine, powered by MicrobeTrace, a free, secure web-browser based visualization tool that facilitates the integration and analysis of surveillance, epidemiologic and genetic data. Hantanet enables hantavirus data submission, classification, analysis and visualization to improve hantavirus domestic surveillance, standardize and modernize diagnostics, case reporting and data sharing between the CDC and academic institutions, state and public health labs.

Developed By (some folks at) CDC

Access Request, Repo Creation Request

• CDC GitHub Open Project Request Form [Requires a CDC Office365 login, if you do not have a CDC Office365 please ask a friend who does to submit the request on your behalf. If you're looking for access to the CDCEnt private organization, please use the GitHub Enterprise Cloud Access Request form.]

Related documents

• Open Practices
• Rules of Behavior
• Thanks and Acknowledgements
• Disclaimer
• Contribution Notice
• Code of Conduct

Overview

Describe the purpose of your project. Add additional sections as necessary to help collaborators and potential collaborators understand and use your project.

Public Domain

This project constitutes a work of the United States Government and is not
subject to domestic copyright protection under 17 USC § 105. This project is in
the public domain within the United States, and copyright and related rights in
the work worldwide are waived through the CC0 1.0 Universal public domain dedication.
All contributions to this project will be released under the CC0 dedication. By
submitting a pull request you are agreeing to comply with this waiver of
copyright interest.

License

The project utilizes code licensed under the terms of the Apache Software
License and therefore is licensed under ASL v2 or later.

This program is free software: you can redistribute it and/or modify it under
the terms of the Apache Software License version 2, or (at your option) any
later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE. See the Apache Software License for more details.

You should have received a copy of the Apache Software License along with this
program. If not, see http://www.apache.org/licenses/LICENSE-2.0.html

Privacy

This project contains only non-sensitive, publicly available data and
information. All material and community participation is covered by the
Surveillance Platform Disclaimer
and Code of Conduct.
For more information about CDC's privacy policy, please visit http://www.cdc.gov/privacy.html.

Contributing

Anyone is encouraged to contribute to the project by forking
and submitting a pull request. (If you are new to GitHub, you might start with a
basic tutorial.) By contributing
to this project, you grant a world-wide, royalty-free, perpetual, irrevocable,
non-exclusive, transferable license to all users under the terms of the
Apache Software License v2 or
later.

Before you get started, please read the Developer's Guide to MicrobeTrace.

All comments, messages, pull requests, and other submissions received through
CDC including this GitHub page are subject to the Presidential Records Act
and may be archived. Learn more at http://www.cdc.gov/other/privacy.html.

Records

This project is not a source of government records, but is a copy to increase
collaboration and collaborative potential. All government records will be
published through the CDC web site.

Notices

Please refer to CDC's Template Repository
for more information about contributing to this repository,
public domain notices and disclaimers,
and code of conduct.

Adding custom symbols (png, jpg, and svg) to be used in the github web application - Collaborators only

1. Switch to the dev branch of this repo.
2. In the project, navigate to the img/custom-symbols folder.
3. Click "Add file" -> click "Upload files".
4. Add/Drag n Drop the desired img files and commit changes.
5. Within the same folder, click on the symbols.json to open it.
6. Click the edit (pencil) icon.
7. Add the new file names to the list in the same format as the current ones (i.e "custom-icon.png").
8. ENSURE to add commas after file names that are not the last one in the list. The last one should not have a comma.
9. Commit changes and give about 10-15 minutes for the webapp to build and check to see if the new symbols are available.

Adding custom symbols (png, jpg, and svg) to be used in the github web application - External Request

Email desired symbol files to Roxy Cintron (vrw7@cdc.gov) with request

Source: https://github.com/CDCgov/HantaNet